<![CDATA[大数据]]>http://an.forum.genostack.com/category/27RSS for NodeSat, 13 Jun 2026 13:10:10 GMTMon, 29 Jan 2024 10:46:34 GMT60<![CDATA[lakefs]]>71794678-875a-4f70-85b7-af01aa4c8691-image.png

]]>http://an.forum.genostack.com/topic/1038/lakefshttp://an.forum.genostack.com/topic/1038/lakefsMon, 29 Jan 2024 10:46:34 GMT<![CDATA[Parabricks验证记录]]>https://developer.nvidia.com/blog/search-posts/?q=parabricks&faceted_search_industry_str=Healthcare+%26+Life+Sciences
一些应用案例

]]>http://an.forum.genostack.com/topic/1029/parabricks验证记录http://an.forum.genostack.com/topic/1029/parabricks验证记录Thu, 04 Jan 2024 08:11:13 GMT<![CDATA[Open-Source Data Viz with Superset and DuckDB]]>https://jorritsandbrink.substack.com/p/open-source-data-viz-with-superset
d2f2a32a-84fc-4a60-8aff-b7ef4977d41e-image.png

]]>http://an.forum.genostack.com/topic/1022/open-source-data-viz-with-superset-and-duckdbhttp://an.forum.genostack.com/topic/1022/open-source-data-viz-with-superset-and-duckdbSat, 16 Dec 2023 09:40:11 GMT<![CDATA[jupyterlab 远程访问]]>https://medium.com/mlearning-ai/set-up-remote-jupyter-lab-notebook-server-for-remote-browser-access-2cef464f203e

]]>http://an.forum.genostack.com/topic/1021/jupyterlab-远程访问http://an.forum.genostack.com/topic/1021/jupyterlab-远程访问Sat, 16 Dec 2023 03:29:52 GMT<![CDATA[Iceberg + Spark + Trino + Dagster: modern, open-source data stack demo]]>f420072e-9274-4589-a969-01c940376714-image.png
https://cube.dev/

]]>http://an.forum.genostack.com/topic/1017/iceberg-spark-trino-dagster-modern-open-source-data-stack-demohttp://an.forum.genostack.com/topic/1017/iceberg-spark-trino-dagster-modern-open-source-data-stack-demoThu, 14 Dec 2023 07:26:58 GMT<![CDATA[ssd和hdd混合]]>https://serverfault.com/questions/1144193/kubernetes-rook-ceph-different-pools-for-different-use-cases

]]>http://an.forum.genostack.com/topic/1013/ssd和hdd混合http://an.forum.genostack.com/topic/1013/ssd和hdd混合Tue, 12 Dec 2023 06:13:25 GMT<![CDATA[NCBI ENA的数据库设计]]>https://docs.ropensci.org/restez/
NOTE: Starting with v2.0.0, the database backend changed from MonetDBLite to duckdb. Because of this change, restez v2.0.0 or higher is not compatible with databases built with previous versions of restez.

]]>http://an.forum.genostack.com/topic/1010/ncbi-ena的数据库设计http://an.forum.genostack.com/topic/1010/ncbi-ena的数据库设计Mon, 11 Dec 2023 06:50:35 GMT<![CDATA[Pubmed]]>The updated version of PubMed takes advantage of several new technologies to improve the user experience. The underlying document data indexed in the updated version is a merger of content from PubMed, Bookshelf and PubMed Central (PMC). This combined dataset allows us to display relevant information not previously available in a PubMed record, such as reference citations from PMC. While legacy PubMed limited the number of variants for a wildcard (‘*’) search, PubMed is now capable of unlimited wildcard searches thanks to Solr (https://lucene.apache.org/solr/), the open-source enterprise search system that PubMed now uses for document indexing. Users will find that PubMed now has greater scalability and reliability, provided not only by Solr, but also by the MongoDB storage solution and the modern cloud architecture that together ensure both redundancy between data centers and also trustworthy backup environments. When visiting PubMed, users will enjoy a modern web experience using the latest web technologies and standards, all provided by the Django web framework.

https://academic.oup.com/nar/article/49/D1/D10/5937080

]]>http://an.forum.genostack.com/topic/1009/pubmedhttp://an.forum.genostack.com/topic/1009/pubmedMon, 11 Dec 2023 03:55:23 GMT<![CDATA[minikube使用指南]]>https://tech.olx.com/running-spark-on-kubernetes-a-fully-functional-example-and-why-it-makes-sense-for-olx-d56b6a61fcbe

]]>http://an.forum.genostack.com/topic/993/minikube使用指南http://an.forum.genostack.com/topic/993/minikube使用指南Tue, 05 Sep 2023 08:09:40 GMT<![CDATA[知识图谱]]>https://www.nature.com/articles/s41587-023-01848-y

]]>http://an.forum.genostack.com/topic/978/知识图谱http://an.forum.genostack.com/topic/978/知识图谱Fri, 28 Jul 2023 07:32:19 GMT<![CDATA[使用Jupytext将Rmd 转成jpuyter notebook]]>https://codes.correlaid.org/first steps/r/jupyter/2021/03/02/Convert-Rmd-files-to-Jupyter-Notebook.html
jupytext --to notebook script.Rmd

]]>http://an.forum.genostack.com/topic/976/使用jupytext将rmd-转成jpuyter-notebookhttp://an.forum.genostack.com/topic/976/使用jupytext将rmd-转成jpuyter-notebookWed, 26 Jul 2023 10:10:25 GMT<![CDATA[GenoStack对大数据分析的支持]]>运行spark-shell
./bin/spark-shell --master k8s://192.168.39.6:8443 --conf spark.kubernetes.container.image=spark --conf spark.kubernetes.context=minikube --conf spark.kubernetes.namespace=spark-demo --verbose

]]>http://an.forum.genostack.com/topic/972/genostack对大数据分析的支持http://an.forum.genostack.com/topic/972/genostack对大数据分析的支持Thu, 20 Jul 2023 09:54:29 GMT<![CDATA[数据变现]]>7134af68-82a2-4deb-b1fa-a0194ae0f572-image.png

]]>http://an.forum.genostack.com/topic/960/数据变现http://an.forum.genostack.com/topic/960/数据变现Wed, 12 Jul 2023 09:14:26 GMT<![CDATA[数据库的选择]]>517349ac-457c-48eb-95a8-533580d7a8df-image.png

]]>http://an.forum.genostack.com/topic/948/数据库的选择http://an.forum.genostack.com/topic/948/数据库的选择Thu, 06 Jul 2023 05:42:40 GMT<![CDATA[Bioverse]]>1687564622158.gif

]]>http://an.forum.genostack.com/topic/937/bioversehttp://an.forum.genostack.com/topic/937/bioverseMon, 03 Jul 2023 05:57:32 GMT<![CDATA[solara]]>https://solara.dev/docs/tutorial/streamlit 和streamlit的对比

]]>http://an.forum.genostack.com/topic/926/solarahttp://an.forum.genostack.com/topic/926/solaraWed, 21 Jun 2023 09:30:34 GMT<![CDATA[Netflix架构]]>a64aff4c-5a53-4106-850a-e83731d759a0-image.png

]]>http://an.forum.genostack.com/topic/922/netflix架构http://an.forum.genostack.com/topic/922/netflix架构Wed, 14 Jun 2023 05:40:06 GMT<![CDATA[如何选择数据库]]>b170b5c8-e4ca-48a2-b5bc-1608b3b4476f-image.png

]]>http://an.forum.genostack.com/topic/916/如何选择数据库http://an.forum.genostack.com/topic/916/如何选择数据库Tue, 06 Jun 2023 03:49:43 GMT<![CDATA[不同的数据岗位]]>5c2f5180-55e5-45de-80a9-9c89938dc4b6-image.png

]]>http://an.forum.genostack.com/topic/913/不同的数据岗位http://an.forum.genostack.com/topic/913/不同的数据岗位Thu, 01 Jun 2023 03:54:23 GMT<![CDATA[Data Architecture and Data Engineering]]>data pipeline.gif

]]>http://an.forum.genostack.com/topic/912/data-architecture-and-data-engineeringhttp://an.forum.genostack.com/topic/912/data-architecture-and-data-engineeringThu, 01 Jun 2023 03:46:29 GMT<![CDATA[cocalc]]>https://doc.cocalc.com/index.html
Hello, and welcome to CoCalc. CoCalc is a virtual online workspace for calculations, research, collaboration and authoring documents. Your web browser is all you need to escape the confined space of your desktop and move to the cloud. This guide explains the features of CoCalc in depth and shows how you can use them productively.

]]>http://an.forum.genostack.com/topic/911/cocalchttp://an.forum.genostack.com/topic/911/cocalcWed, 31 May 2023 02:09:02 GMT<![CDATA[SQL执行顺序]]>16d3e874-915f-4d84-9f62-d0a57ed012e6-image.png

]]>http://an.forum.genostack.com/topic/910/sql执行顺序http://an.forum.genostack.com/topic/910/sql执行顺序Tue, 30 May 2023 03:57:35 GMT<![CDATA[apache data stack]]>37c50bfa-8e7f-4c30-8917-33052f20f1e4-image.png

]]>http://an.forum.genostack.com/topic/907/apache-data-stackhttp://an.forum.genostack.com/topic/907/apache-data-stackMon, 29 May 2023 03:24:53 GMT<![CDATA[delta lake k8s spark]]>dd933512-b64f-434b-bfd1-468b5cf6bcb2-image.png

]]>http://an.forum.genostack.com/topic/906/delta-lake-k8s-sparkhttp://an.forum.genostack.com/topic/906/delta-lake-k8s-sparkThu, 25 May 2023 16:54:09 GMT<![CDATA[生物信息领域github topic]]>生物学：
genomics
biology
Microbiology
Agrigenomics
bioinformatics
cell
gene
gene expression
gene regulation
genetics
Population Genomics
genome
DNA
RNA
Protein
epigenetics
transcripts

化学：
molecular

临床研究类：
cancer
Complex Disease
Clinical
genetic disease
Oncology
Pharmacogenomics
Drug Discovery
Immunogenomics
Neurogenomics
pathogen

技术：
next-generation sequencing
illumina
pacbio
nanopore
python
R
spark
statistics
Linux
bash
julia
javasctipt

]]>http://an.forum.genostack.com/topic/902/生物信息领域github-topichttp://an.forum.genostack.com/topic/902/生物信息领域github-topicWed, 24 May 2023 03:52:40 GMT<![CDATA[spark在生信领域的应用]]>https://www.sciencedirect.com/science/article/pii/S2405844023005753

]]>http://an.forum.genostack.com/topic/900/spark在生信领域的应用http://an.forum.genostack.com/topic/900/spark在生信领域的应用Mon, 22 May 2023 10:51:53 GMT