<?xml version="1.0" encoding="UTF-8"?><rss xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:content="http://purl.org/rss/1.0/modules/content/" xmlns:atom="http://www.w3.org/2005/Atom" version="2.0"><channel><title><![CDATA[基因组注释工具　SnpEff]]></title><description><![CDATA[<p dir="auto">SnfEff介绍和使用测试记录<br />
<a href="https://pcingola.github.io/SnpEff/" rel="nofollow ugc">https://pcingola.github.io/SnpEff/</a></p>
<p dir="auto">什么是注释？<br />
Annotations</p>
<p dir="auto">So, you have a huge file describing all the differences between your sample and the reference genome. But you want to know more about these variants than just their genetic coordinates. E.g.: Are they in a gene? In an exon? Do they change protein coding? Do they cause premature stop codons?</p>
<p dir="auto">SnpEff can help you answer all these questions. The process of adding this information about the variants is called "Annotation".</p>
<p dir="auto">SnpEff provides several degrees of annotations, from simple (e.g. which gene is each variant affecting) to extremely complex annotations (e.g. will this non-coding variant affect the expression of a gene?). It should be noted that the more complex the annotations, the more it relies in computational predictions. Such computational predictions can be incorrect, so results from SnpEff (or any prediction algorithm) cannot be trusted blindly, they must be analyzed and independently validated by corresponding wet-lab experiments.<br />
思考：如果后面把vcf放到数据库里面　这些注释其实就可以当作一个个列　数据就是一些tag</p>
]]></description><link>http://an.forum.genostack.com/topic/231/基因组注释工具-snpeff</link><generator>RSS for Node</generator><lastBuildDate>Sat, 13 Jun 2026 09:36:54 GMT</lastBuildDate><atom:link href="http://an.forum.genostack.com/topic/231.rss" rel="self" type="application/rss+xml"/><pubDate>Thu, 25 Feb 2021 07:34:16 GMT</pubDate><ttl>60</ttl><item><title><![CDATA[Reply to 基因组注释工具　SnpEff on Thu, 25 Feb 2021 08:34:55 GMT]]></title><description><![CDATA[<p dir="auto">SnpEff需要一个数据库来进行注释　已经支持的物种可以通过下面的命令查询：<br />
$ java -jar snpEff.jar databases | less<br />
下载数据库<br />
$ java -jar snpEff.jar download -v GRCh37.75</p>
<p dir="auto">如果对应物种没有数据库　可以自己做数据库<br />
<a href="https://pcingola.github.io/SnpEff/se_buildingdb/" rel="nofollow ugc">https://pcingola.github.io/SnpEff/se_buildingdb/</a></p>
]]></description><link>http://an.forum.genostack.com/post/454</link><guid isPermaLink="true">http://an.forum.genostack.com/post/454</guid><dc:creator><![CDATA[anneng]]></dc:creator><pubDate>Thu, 25 Feb 2021 08:34:55 GMT</pubDate></item></channel></rss>