<![CDATA[GO Kegg分析]]>https://ucdavis-bioinformatics-training.github.io/2018-June-RNA-Seq-Workshop/friday/enrichment.html

]]>http://an.forum.genostack.com/topic/497/go-kegg分析RSS for NodeSat, 13 Jun 2026 10:44:02 GMTFri, 17 Dec 2021 03:21:25 GMT60<![CDATA[Reply to GO Kegg分析 on Sat, 18 Dec 2021 03:07:35 GMT]]>http://combio-sifbi.org/GeneCloudOmics/
https://github.com/buithuytien/GeneCloudOmics
看看这个工具如何和我们集成

]]>http://an.forum.genostack.com/post/1007http://an.forum.genostack.com/post/1007Sat, 18 Dec 2021 03:07:35 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 13:44:07 GMT]]>https://biit.cs.ut.ee/gprofiler/gost
https://academic.oup.com/nar/article/47/W1/W191/5486750

]]>http://an.forum.genostack.com/post/1006http://an.forum.genostack.com/post/1006Fri, 17 Dec 2021 13:44:07 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 13:39:39 GMT]]>https://www.spandidos-publications.com/10.3892/mmr.2019.10511
GO (geneontology.org) analysis, frequently used in functional enrichment studies of large-scale genes (20), and KEGG (www.genome.jp/kegg) enrichment analysis were performed to investigate the biological pathways that involve differentially expressed mRNAs. In the present study, clusterProfiler (v3.12.0; guangchuangyu.github.io/software/clusterProfiler) and Database for Annotation, Visualization and Integrated Discovery tools (v6.8; http://david.ncifcrf.gov/) were used to analyze the functional enrichment conditions for dysregulated mRNAs (21–23). The false discovery rate (FDR) was calculated to correct the P-value and FDR<0.05 was selected as the threshold for a statistically significant difference.

]]>http://an.forum.genostack.com/post/1005http://an.forum.genostack.com/post/1005Fri, 17 Dec 2021 13:39:39 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 13:39:27 GMT]]>可视化:
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2960-9
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2533-3

http://aegis.stanford.edu/

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2003-4-9-r60
DAVID: Database for Annotation, Visualization, and Integrated Discovery
https://david.ncifcrf.gov/

]]>http://an.forum.genostack.com/post/1004http://an.forum.genostack.com/post/1004Fri, 17 Dec 2021 13:39:27 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 12:58:27 GMT]]>https://www.biostars.org/p/201481/#289329
GSEA vs GO enrich

]]>http://an.forum.genostack.com/post/1003http://an.forum.genostack.com/post/1003Fri, 17 Dec 2021 12:58:27 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 12:08:35 GMT]]>Statistics and Data Analysis for Microarrays Using R and Bioconductor
这本书里面讲了很多具体的数学原理

]]>http://an.forum.genostack.com/post/1002http://an.forum.genostack.com/post/1002Fri, 17 Dec 2021 12:08:35 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 12:06:45 GMT]]>https://advaitabio.com/faq-items/understanding-gene-ontology/
对GO 的解释
4b0ba8a2-b85b-4dde-8289-6426a190d484-image.png
GO是一个DAG
这个竞品做的还是比较好的 有个视频

]]>http://an.forum.genostack.com/post/1001http://an.forum.genostack.com/post/1001Fri, 17 Dec 2021 12:06:45 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 11:29:31 GMT]]>https://yulab-smu.top/biomedical-knowledge-mining-book/enrichment-overview.html
对富集分析讲的比较透彻 里面提到了超几何检验
2a0c4ab0-30b7-4af0-9d6c-63a4366e4cbd-image.png

]]>http://an.forum.genostack.com/post/1000http://an.forum.genostack.com/post/1000Fri, 17 Dec 2021 11:29:31 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 07:05:05 GMT]]>https://advaitabio.com/faq-items/understanding-gene-ontology/

]]>http://an.forum.genostack.com/post/999http://an.forum.genostack.com/post/999Fri, 17 Dec 2021 07:05:05 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 07:02:56 GMT]]>https://yulab-smu.top/biomedical-knowledge-mining-book/index.html

]]>http://an.forum.genostack.com/post/998http://an.forum.genostack.com/post/998Fri, 17 Dec 2021 07:02:56 GMT<![CDATA[Reply to GO Kegg分析 on Fri, 17 Dec 2021 07:02:17 GMT]]>https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/goenrichment/tutorial.html

]]>http://an.forum.genostack.com/post/997http://an.forum.genostack.com/post/997Fri, 17 Dec 2021 07:02:17 GMT