<![CDATA[nextstrain调试记录]]>nextstrain的架构：
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]]>http://an.forum.genostack.com/topic/611/nextstrain调试记录RSS for NodeSat, 13 Jun 2026 09:38:36 GMTMon, 28 Mar 2022 06:55:55 GMT60<![CDATA[Reply to nextstrain调试记录 on Wed, 30 Mar 2022 11:39:00 GMT]]>https://terra.bio/workflow-updates-to-the-covid-19-workspace-better-viral-assembly-and-phylogenetics-with-nextstrain/

terra对nextstrain的支持

]]>http://an.forum.genostack.com/post/1350http://an.forum.genostack.com/post/1350Wed, 30 Mar 2022 11:39:00 GMT<![CDATA[Reply to nextstrain调试记录 on Wed, 30 Mar 2022 08:27:22 GMT]]>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8237802/
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
nextstrain的流程部分使用了SnakeMake

]]>http://an.forum.genostack.com/post/1345http://an.forum.genostack.com/post/1345Wed, 30 Mar 2022 08:27:22 GMT<![CDATA[Reply to nextstrain调试记录 on Tue, 29 Mar 2022 07:01:55 GMT]]>https://terra.bio/workflow-updates-to-the-covid-19-workspace-better-viral-assembly-and-phylogenetics-with-nextstrain/

]]>http://an.forum.genostack.com/post/1340http://an.forum.genostack.com/post/1340Tue, 29 Mar 2022 07:01:55 GMT<![CDATA[Reply to nextstrain调试记录 on Tue, 29 Mar 2022 11:37:14 GMT]]>安装
conda create -n nextstrain -c bioconda nextstrain-cli --yes
conda install -c conda-forge mamba --yes
conda activate nextstrain

mamba install -c conda-forge -c bioconda augur auspice nextalign snakemake git --yes
nextstrain check-setup --set-default

]]>http://an.forum.genostack.com/post/1335http://an.forum.genostack.com/post/1335Tue, 29 Mar 2022 11:37:14 GMT