相关链接

• GitHub https://github.com/DiltheyLab/MetaMaps

• boost

  • 官网：https://www.boost.org
  • 下载：https://dl.bintray.com/boostorg/release/1.74.0/source/
  • 安装说明：https://www.boost.org/doc/libs/1_74_0/more/getting_started/unix-variants.html

• 数据库

  • dropbox下载 https://www.dropbox.com/s/6p9o42yufx2vkae/miniSeq%2BH.tar.gz

安装说明（Linux）

Boost

# 下载 boost 并解压
wget https://dl.bintray.com/boostorg/release/1.74.0/source/boost_1_74_0.tar.gz
tar -zxvf boost_1_74_0.tar.gz
cd boost_1_74_0
# 编译boost 并安装(prefix指定安装路径，默认( /usr/local/,需要该目录写权限)
./bootstrap.sh --prefix=path/to/installation/prefix
./b2 install
# 添加动态库搜索路径
vim ~/.bashrc
# ~~~~~~~~~~~~~~在文件末尾添加以下内容~~~~~~~~~~~~~
export LD_LIBRARY_PATH=path/to/installation/prefix/lib/:$LD_LIBRARY_PATH

MetaMaps

# 通过 git 下载 MetaMaps 代码
git clone https://github.com/DiltheyLab/MetaMaps.git
cd MetaMaps
./bootstrap.sh
./configure --with-boost=/path/to/boost [--prefix=...]
make metamaps
./metamaps

# ~~~ boost 和 metamaps 均安装成功后以上命令会显示如下结果  ~~~~~~~~~~~~~~~
MetaMaps v 0.1 

  Simultaneous metagenomic classification and mapping.

Usage:

  ./metamaps mapDirectly|classify|mapAgainstIndex|index

Parameters:

   ./metamaps COMMAND -h for help
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~