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https://2023.igem.wiki/uoregon/software
EZBinder - A one-click solution to De Novo protein binder design that anyone can use.
EZBinder is a python script that automates every step of a common binder design pipeline. It is able to fully automate a workflow that runs binder designs through the pipeline of: rfDiffusion → ProteinMPNN → ESMFold

https://bioinformatics.stackexchange.com/questions/2877/how-to-align-genomic-sequence-with-corresponding-amino-acid-sequence

https://www.ncbi.nlm.nih.gov/Structure/icn3d/docs/icn3d_about.html
iCn3D ("I see in 3D") is a WebGL-based viewer for interactive viewing of three-dimensional macromolecular structures and chemicals on the web, without the need to install a separate application. It can be accessed from the "molecular graphic" that appears on the structure summary page for any record in the Molecular Modeling Database (MMDB).
https://github.com/ncbi/icn3d

iCn3D (I-see-in-3D) has all these features plus its own unique feature: all interactive structure analyses in iCn3D could be converted to analyses in batch mode using Node.js scripts, which call functions in iCn3D. This feature has been available since we modernized the code of iCn3D version 3 to use JavaScript classes.

https://www.researchgate.net/publication/354535372_iCn3D_from_Web-based_3D_Viewer_to_Structure_Analysis_Tool_in_Batch_Mode

依赖DelPhi