Your browser does not seem to support JavaScript. As a result, your viewing experience will be diminished, and you have been placed in read-only mode.
Please download a browser that supports JavaScript, or enable it if it's disabled (i.e. NoScript).
M
参考
https://gatk.broadinstitute.org/hc/en-us/articles/360035531572-Evaluating-the-quality-of-a-germline-short-variant-callset
尚无回复
A
https://www.frontiersin.org/articles/10.3389/fgene.2020.00222/full?&utm_source=Email_to_authors_&utm_medium=Email&utm_content=T1_11.5e1_author&utm_campaign=Email_publication&field=&journalName=Frontiers_in_Genetics&id=521391 Comparison of SNP Calling Pipelines and NGS Platforms to Predict the Genomic Regions Harboring Candidate Genes for Nodulation in Cultivated Peanut
该文献对异源多倍体的snp分析对比了5种流程 可以重点看看
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3536327/ SNP Markers and Their Impact on Plant Breeding
a. *.contig contig sequences without using mate pair information. b. *.scafSeq scaffold sequences (final contig sequences can be extracted by breaking down scaffold sequences at gap regions).
plants-10-02740.pdf 7f079412-d6cd-42b1-9f14-02175b26be85-image.png 对花生做了有参组装 先denovo 然后和参考基因组做了比对 然后直接连接
https://gage.cbcb.umd.edu/ GAGE is an evaluation of the very latest large-scale genome assembly algorithms.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8104905/ A consensus on the Aquaporin Gene Family in the Allotetraploid Plant, Nicotiana tabacum