暗能星系
    • 登录
    • 搜索

    微生物的文献整理

    微生物组分析
    1
    19
    2
    正在加载更多帖子
    • 从旧到新
    • 从新到旧
    • 最多赞同
    回复
    • 在新帖中回复
    登录后回复
    此主题已被删除。只有拥有主题管理权限的用户可以查看。
    • A
      anneng 最后由 编辑

      Assessing the Consequences of Denoising Marker-Based Metagenomic Data 评估denoise对数据的影响
      https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060458

      1 条回复 最后回复 回复 引用 0
      • A
        anneng 最后由 编辑

        16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis
        https://www.nature.com/articles/s41598-022-07995-7
        When we used DADA2 for sequence denoising on the full rRNA operon, the biological variation in the ITS regions appeared to be falsely suppressed
        DADA2用于长读长时，ITS区域的变化会收到抑制

        1 条回复 最后回复 回复 引用 0
        • A
          anneng 最后由 编辑

          为什么要去噪？
          https://forum.qiime2.org/t/metaphlan2-vs-vsearch-for-fungal-metagenomic-shotgun-sequences/6536
          Dereplication and clustering make sense when you have a single region, but it’s not designed to work with data from the full genome.

          1 条回复 最后回复 回复 引用 0
          • A
            anneng 最后由 编辑

            A practical guide to amplicon
            and metagenomic analysis of microbiome data

            e1613612-7628-4ca4-b6c8-9389534ee93f-image.png
            b2373005-b158-4060-b634-b3dfa1a4ffc1-image.png

            1 条回复 最后回复 回复 引用 0
            • A
              anneng 最后由 编辑

              https://astrobiomike.github.io/misc/amplicon_and_metagen
              Amplicon and metagenomics overview
              fbb18c48-1eee-4126-a62b-b789c9aba9e0-image.png
              667f0bf3-e32f-4ccf-9cf8-4464163fe263-image.png

              1 条回复 最后回复 回复 引用 0
              • A
                anneng 最后由 编辑

                https://www.nature.com/articles/ismej2017119
                Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
                7b544a81-7a38-4f16-b697-f393aca1a384-image.png

                1 条回复 最后回复 回复 引用 0
                • A
                  anneng 最后由 编辑

                  https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6427-1
                  Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences

                  1 条回复 最后回复 回复 引用 0
                  • A
                    anneng 最后由 编辑

                    f1000research-320860.pdf
                    f89613d5-8bb8-4251-ba74-661630562948-image.png

                    1 条回复 最后回复 回复 引用 0
                    • A
                      anneng 最后由 编辑

                      https://microbiome.netlify.app/index.html
                      Microbiome in R
                      Exploring microbiome analysis using R

                      1 条回复 最后回复 回复 引用 0
                      • A
                        anneng 最后由 编辑

                        Computational Methods for Microbiome Analysis
                        Computational Methods for Microbiome Analysis.PDF

                        1 条回复 最后回复 回复 引用 0
                        • A
                          anneng 最后由 编辑

                          https://academic.oup.com/nar/article/48/16/e93/5868338?login=false
                          Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju

                          1 条回复 最后回复 回复 引用 0
                          • A
                            anneng 最后由 编辑

                            https://www.nature.com/articles/s41597-022-01308-3
                            Comprehensive 16S rRNA and metagenomic data from the gut microbiome of aging and rejuvenation mouse models

                            1 条回复 最后回复 回复 引用 0
                            • A
                              anneng 最后由 编辑

                              https://assets.researchsquare.com/files/rs-1731798/v1/10f6aaca-0ab4-4ad5-b9e2-fc3489b8f0d1.pdf?c=1655233477
                              Comparison of Oxford Nanopore Technologies and
                              Illumina MiSeq sequencing with mock communities and
                              agricultural soil

                              1 条回复 最后回复 回复 引用 0
                              • A
                                anneng 最后由 编辑

                                Carlotta-Catozzi-compresso.pdf

                                1 条回复 最后回复 回复 引用 0
                                • A
                                  anneng 最后由 编辑

                                  https://peerj.com/articles/5364/
                                  Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches

                                  1 条回复 最后回复 回复 引用 0
                                  • A
                                    anneng 最后由 编辑

                                    https://www.mdpi.com/1422-0067/23/17/9834/htm
                                    Combination of Whole Genome Sequencing and Metagenomics for Microbiological Diagnostics
                                    3d091668-c053-4aa3-a2b9-6988c37d1464-image.png

                                    1 条回复 最后回复 回复 引用 0
                                    • First post
                                      Last post
                                    Powered by 暗能星系