jupytor conda

anneng

source /opt/conda/etc/profile.d/conda.sh
conda activate

conda create -p ~/bioinfo python=3.4 -y
conda activate /home/jovyan/bioinfo/

conda install ipykernel -y
python -m ipykernel install --prefix=/home/jovyan/bioinfo/ --name "python(bioinfo_env)"

anneng

conda config --set ssl_verify False
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/pkgs/main/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/pkgs/free/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/cloud/msys2/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/cloud/bioconda/
conda config --add channels https://mirrors.ustc.edu.cn/anaconda/cloud/menpo/
conda config --set show_channel_urls yes

anneng

在jupyter安装qiime2环境
conda env create -p ~/Qiime2/qiime2/ --file qiime2-2023.2-py38-linux-conda.yml
source /opt/conda/etc/profile.d/conda.sh
conda activate
conda activate /home/jovyan/Qiime2/qiime2
conda install ipykernel -y

python -m ipykernel install --user --name=python_qiime2023_2

anneng

https://towardsdatascience.com/get-your-conda-environment-to-show-in-jupyter-notebooks-the-easy-way-17010b76e874