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    • Z
      zhanglu 最后由 编辑

      docker load < csi-node-driver-registrar.tar
      docker load < cephcsi.tgar
      docker load <csi-attacher.tar
      docker load < csi-snapshotter.tar
      docker load < csi-resizer.tar
      docker load < csi-provisioner.tar
      docker load <-o ceph1.tar
      docker load < -o ceph.tar

      docker load < kube-controllers.tar
      docker load < cni.tar
      docker load < node.tar
      docker load < coredns.tar
      docker load < cluster-proportional-autoscaler-amd64.tar
      docker load < -o apiserver.tar
      docker load < manager.tar
      docker load < proxy.tar
      docker load < scheduler.tar
      docker load < ngins.tar
      docker load < cache.tar
      docker load < plugin.tar
      docker load <controller.tar

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      • Z
        zhanglu 最后由 编辑

        cluster:
        id: 807d820b-5c5b-451c-9f52-41b93d5d905a
        health: HEALTH_ERR
        full ratio(s) out of order
        Low space hindering backfill (add storage if this doesn't resolve itself): 5 pgs backfill_toofull
        178 pgs not deep-scrubbed in time
        117 pgs not scrubbed in time

        services:
        mon: 3 daemons, quorum bm,bo,bp (age 39h)
        mgr: a(active, since 39h), standbys: b
        mds: 1/1 daemons up, 1 hot standby
        osd: 51 osds: 51 up (since 109m), 51 in (since 109m); 59 remapped pgs

        data:
        volumes: 1/1 healthy
        pools: 4 pools, 2097 pgs
        objects: 279.97M objects, 306 TiB
        usage: 617 TiB used, 84 TiB / 701 TiB avail
        pgs: 5001255/601565087 objects misplaced (0.831%)
        2028 active+clean
        54 active+remapped+backfilling
        10 active+clean+scrubbing+deep
        5 active+remapped+backfill_toofull

        io:
        client: 338 KiB/s rd, 8.8 MiB/s wr, 175 op/s rd, 7 op/s wr
        recovery: 65 MiB/s, 49 objects/s

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        • Z
          zhanglu 最后由 编辑

          datasource:
          # SQLite 数据库文件:项目根目录自动生成 cromwell_log.db(对应你的数据库名)
          url: jdbc:sqlite:/home/genostack/workspace/CromwellStatus/cromwell_log.db
          # SQLite 无用户名密码,留空
          username:
          password:
          driver-class-name: org.sqlite.JDBC
          initialization-mode: always # 开启自动执行脚本
          schema: classpath:schema.sql # 建表脚本路径

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          • Z
            zhanglu 最后由 编辑

            ID HOST USED AVAIL WR OPS WR DATA RD OPS RD DATA STATE
            0 node1 8480G 2468G 0 0 0 0 exists,up
            1 node1 9556G 1392G 20 3438k 18 4128k exists,up
            2 node1 8933G 2015G 36 1188k 8 1328k exists,up
            3 node1 8795G 2153G 0 0 0 0 exists,up
            4 node1 9250G 1698G 0 0 0 0 exists,up
            5 node1 8957G 1991G 0 0 0 0 exists,up
            6 node1 8772G 2176G 0 2563 0 0 exists,up
            7 node2 9247G 1701G 1 7584 0 0 exists,up
            8 node2 9939G 1009G 0 0 7 20.2k exists,up
            9 node2 9352G 1596G 0 0 0 0 exists,up
            10 node2 9.87T 838G 0 2563 0 0 exists,up
            11 node2 9656G 1292G 0 0 0 0 exists,up
            12 node2 9678G 1270G 0 0 0 0 exists,up
            13 node2 9558G 1390G 0 2563 0 0 exists,up
            14 node3 9945G 1003G 0 0 0 0 exists,up
            15 node3 9762G 1186G 0 0 0 0 exists,up
            16 node3 9231G 1717G 0 0 0 0 exists,up
            17 node3 9239G 1709G 0 2902 0 0 exists,up
            18 node3 9668G 1280G 0 2563 0 0 exists,up
            19 node3 9551G 1397G 0 721k 0 0 exists,up
            20 node3 9859G 1089G 0 0 0 0 exists,up
            21 node8 16.1T 2062G 18 1638k 7 831k exists,up
            22 node7 13.1T 1450G 2 1638k 9 844k exists,up
            23 node7 12.8T 1780G 0 0 0 0 exists,up
            24 node7 13.2T 1283G 0 89.7k 0 0 exists,up
            25 node7 12.8T 1731G 0 2563 0 0 exists,up
            26 node7 13.4T 1119G 0 0 0 0 exists,up
            27 node5 12.5T 2039G 0 2563 0 0 exists,up
            28 node5 12.4T 2160G 0 0 0 0 exists,up
            29 node5 12.9T 1658G 4 27.4k 0 0 exists,up
            30 node5 12.7T 1887G 34 6468k 21 6494k exists,up
            31 node5 12.8T 1781G 0 0 0 0 exists,up
            32 node5 12.2T 2337G 0 0 0 0 exists,up
            33 node5 12.5T 2022G 3 819k 9 842k exists,up
            34 node6 13.1T 1443G 0 12.1k 0 0 exists,up
            35 node6 12.6T 1935G 0 0 0 0 exists,up
            36 node6 13.0T 1527G 1 592k 0 0 exists,up
            37 node6 12.5T 2095G 0 195 0 0 exists,up
            38 node6 12.8T 1731G 0 0 0 0 exists,up
            39 node6 13.4T 1174G 0 2563 0 0 exists,up
            40 node6 13.0T 1557G 15 2928k 19 3797k exists,up
            41 node8 16.4T 1814G 1 2563 7 832k exists,up
            42 node8 15.6T 2574G 0 819 0 0 exists,up
            43 node8 15.8T 2346G 0 0 0 0 exists,up
            44 node8 16.2T 1979G 76 1524k 9 852k exists,up
            45 node8 15.8T 2403G 0 0 0 0 exists,up
            46 node8 15.8T 2405G 8 2515k 10 2478k exists,up
            47 node8 16.1T 2057G 1 8408 0 0 exists,up
            48 node8 16.7T 1448G 0 0 0 0 exists,up
            49 node8 15.3T 2888G 0 0 0 0 exists,up
            50 node8 16.1T 2045G 0 0 0 0 exists,up

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            • Z
              zhanglu 最后由 编辑

              [root@node1 prod]# kubectl get pod -n genostack-base-dev
              NAME READY STATUS RESTARTS AGE
              postgres-7cffc9f66-6ngfr 0/1 ContainerCreating 0 17m
              postgres-7cffc9f66-fqmzm 0/1 Terminating 0 27m
              redis-bd7c6cbb4-gtdz9 1/1 Running 0 30d

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              • Z
                zhanglu 最后由 zhanglu 编辑

                Resource Requests Limits


                cpu 46867m (41%) 58400m (52%)
                memory 242859107584 (28%) 315783595264 (37%)
                ephemeral-storage 0 (0%) 0 (0%)
                hugepages-1Gi 0 (0%) 0 (0%)
                hugepages-2Mi 0 (0%) 0 (0%)
                Events:
                Type Reason Age From Message


                Normal NodeReady 8m (x252 over 16h) kubelet Node node1 status is now: NodeReady
                Normal NodeNotReady 59s (x254 over 16h) kubelet Node node1 status is now: NodeNotReady

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                • Z
                  zhanglu 最后由 编辑

                  ps -eo pid,stat,cmd | grep -E '^.+ D'

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                  • Z
                    zhanglu 最后由 编辑

                    [root@node1 account]# ps -eo pid,stat,cmd | grep -E '^.+ D'
                    382513 Ds /opt/gitlab/embedded/bin/postgres -D /var/opt/gitlab/postgresql/data
                    382518 Ds postgres: autovacuum launcher process
                    382519 Ds postgres: stats collector process
                    385554 D svlogd -tt /var/log/gitlab/redis
                    385557 D svlogd -tt /var/log/gitlab/sidekiq
                    385704 D svlogd -tt /var/log/gitlab/node-exporter
                    385705 D svlogd -tt /var/log/gitlab/gitlab-monitor
                    385707 D svlogd -tt /var/log/gitlab/prometheus
                    385722 Ds postgres: gitlab-psql postgres [local] SELECT
                    385926 D tail --follow=name --retry /var/log/gitlab/nginx/error.log /var/log/gitlab/nginx/current /var/log/gitlab/nginx/gitlab_error.log /var/log/gitlab/nginx/access.log /var/log/gitlab/nginx/gitlab_access.log /var/log/gitlab/prometheus/current /var/log/gitlab/prometheus/state /var/log/gitlab/postgresql/current /var/log/gitlab/postgresql/state /var/log/gitlab/redis/current /var/log/gitlab/redis/state /var/log/gitlab/alertmanager/current /var/log/gitlab/alertmanager/state /var/log/gitlab/redis-exporter/current /var/log/gitlab/redis-exporter/state /var/log/gitlab/gitlab-shell/gitlab-shell.log /var/log/gitlab/sidekiq/current /var/log/gitlab/sidekiq/state /var/log/gitlab/gitlab-monitor/current /var/log/gitlab/gitlab-monitor/state /var/log/gitlab/sshd/current /var/log/gitlab/gitlab-workhorse/current /var/log/gitlab/gitlab-workhorse/state /var/log/gitlab/unicorn/unicorn_stderr.log /var/log/gitlab/unicorn/current /var/log/gitlab/unicorn/unicorn_stdout.log /var/log/gitlab/unicorn/state /var/log/gitlab/gitaly/current /var/log/gitlab/gitaly/state /var/log/gitlab/postgres-exporter/current /var/log/gitlab/postgres-exporter/state /var/log/gitlab/node-exporter/current /var/log/gitlab/node-exporter/state /var/log/gitlab/gitlab-rails/production.log /var/log/gitlab/gitlab-rails/gitlab-rails-db-migrate-2023-02-21-09-56-26.log /var/log/gitlab/gitlab-rails/application.log /var/log/gitlab/gitlab-rails/grpc.log /var/log/gitlab/gitlab-rails/production_json.log /var/log/gitlab/gitlab-rails/api_json.log /var/log/gitlab/logrotate/current /var/log/gitlab/logrotate/state

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                    • Z
                      zhanglu 最后由 编辑

                      SELECT count(*) FROM "METADATA_ENTRY";
                      SELECT * FROM "METADATA_ENTRY" where "WORKFLOW_EXECUTION_UUID" = 'e845ff2e-95ba-4108-bec5-7b8ece2fe76d' ;
                      SELECT * FROM "METADATA_ENTRY" where "WORKFLOW_EXECUTION_UUID" = 'e1ae68d6-8c6d-4f91-b970-06e65e57c564' ;

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                      • Z
                        zhanglu 最后由 编辑

                        http://192.168.30.202:31237/api/workflows/v1/70d9a7f6-33c9-4ef4-80bf-62e7af9cc662/metadata

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                        • Z
                          zhanglu 最后由 编辑

                          6e362360-32d0-4311-8d9f-a1a2ed5b61c2
                          e845ff2e-95ba-4108-bec5-7b8ece2fe76d
                          e1ae68d6-8c6d-4f91-b970-06e65e57c564

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                          • Z
                            zhanglu 最后由 编辑

                            select "WORKFLOW_EXECUTION_UUID" , "WORKFLOW_NAME", "WORKFLOW_STATUS" from "WORKFLOW_METADATA_SUMMARY_ENTRY" where "WORKFLOW_STATUS" = 'Running';

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                            • Z
                              zhanglu 最后由 编辑

                              [root@node3 cephfs_data]# ps -eo pid,stat,cmd | grep -E '^.+ D'
                              647454 D sync
                              773495 D sync
                              777729 D /usr/bin/mount -o bind,remount /proc/7817/fd/50 /var/lib/kubelet/pods/ce2112de-6092-400b-8d1f-ff9c7f0feb60/volume-subpaths/data/cromwell/0
                              807143 D sync
                              831541 D sync
                              862778 D sync
                              923295 D sync
                              925182 D sync
                              1120488 D sync
                              1137925 D sync
                              1438346 D sync
                              1685722 D /usr/bin/mount -o bind,remount /proc/7817/fd/54 /var/lib/kubelet/pods/01c428af-c57a-4159-93ce-4e57c73ed85b/volume-subpaths/data/cromwell/0
                              1698130 D sync
                              1699192 D sync
                              1729571 D sync
                              1729918 D sync
                              1916667 D sync
                              1957175 D sync
                              3327874 S+ grep --color=auto -E ^.+ D
                              3402901 DNs (coredump)
                              3883466 D+ rm -rf ./5b9c9af2-49ab-4cd3-bbe9-637c131ef344 ./ff853c49-720c-442a-b5bf-fb50c63736c2 ./4dba7671-4615-4ce8-8083-09c1b6a3b895 ./a00fd097-cd21-4561-9dcc-2bb9b66d58fa ./2ca5d416-7398-43f4-b368-68e790abaf95 ./f7f4938d-0b2a-4e95-9f6c-0b9e3c442ef6 ./5958823a-cb9b-4556-a30d-4142eba696c7 ./8281f2d8-fcb9-4508-853d-be96fe10535e ./0ee9f259-014c-44e1-9453-f2af6f423c06 ./4fbe43e5-4018-434f-a6fd-61ba3ebc69e6 ./03a22cb6-5ca6-4b58-8f32-b95988a4605c ./58ade6fd-845a-4ee5-bebd-b0dce6cfdac5 ./4b8fde55-6387-4fd3-9092-d4c19c44ab9c ./aed461b9-dfff-4fc1-b089-f33b2673b1c5 ./7a932a56-0a47-42d4-893b-d0435a2edc1c ./57ff22a3-5fa4-4d77-94b7-71011cb6238e ./e8c72d7c-1d92-4d3c-8702-f4cf50ea2ee2 ./93a9de1b-7be3-40ba-9e9e-3364b67b202d ./e3d77188-3693-4f7f-81e7-8688b4b01dec ./8bf3777b-361c-46c1-9328-c9f3d5cc2822 ./eaf418dc-01b3-4bc0-b272-d2ba3f2493ce ./1c24a9f4-2e97-44c8-af0a-85db7e374956 ./77b44fc3-2f4b-480b-b01a-d57a1395fe1e ./f2fd7fe2-3903-437b-a40f-2e812dc35201 ./a862e7a9-99e2-4c31-82ba-3e87c0421354 ./b16de460-9245-41d5-8b69-444e95e549a0 ./815801ee-1ded-46db-933a-0decd35d5fe4 ./75f6352d-2080-40dc-9ac5-ce4c6566e0c2 ./9ef6a0eb-1d37-4966-b7e1-1ffc4b9abc22 ./d97f36bd-6805-4bfa-a386-0b90bb42d8cd ./345b403e-45e2-4e09-9b99-23b1b3c7f33c ./c5ef2a0e-2868-4e09-9c26-cf5357f60448 ./b0b9b6c3-bcb6-479f-83c5-429e306ff1ad ./4ec53f20-4f2c-430c-a332-7736584b26c7 ./02ac4847-d640-4312-a761-e7fd01d45c27 ./53630622-fa7f-4cf6-91b2-12768883af6f ./e1660f00-841f-4899-a4b2-c2451edf2b36 ./07de3f21-1de8-4326-9bf7-5774a2791eaa ./97914a70-2fe4-4c1f-a326-adebe8222df0 ./695f925d-723b-4446-b9b1-11dfa642f065
                              3911819 D sync
                              3948171 D sync

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                              • Z
                                zhanglu 最后由 zhanglu 编辑

                                SELECT "METADATA_KEY", COUNT()
                                FROM "METADATA_ENTRY"
                                WHERE "WORKFLOW_EXECUTION_UUID" = 'e886888f-c972-4932-a9a4-187525877ea0'
                                GROUP BY "METADATA_KEY"
                                ORDER BY COUNT(
                                ) DESC
                                LIMIT 20;

                                DELETE FROM "METADATA_ENTRY"
                                WHERE "WORKFLOW_EXECUTION_UUID" = '32d44941-c654-4163-b01e-aa41a0cc597a'
                                AND "METADATA_KEY" = 'vmStartTime'

                                          METADATA_KEY              |  count  
                                

                                ----------------------------------------+---------
                                vmStartTime | 2023761
                                executionStatus | 9
                                stderr | 6
                                stdout | 6
                                commandLine | 6
                                start | 4
                                callRoot | 3
                                backend | 3
                                callCaching:effectiveCallCachingMode | 3
                                runtimeAttributes:failOnStderr | 3
                                runtimeAttributes:maxRetries | 3
                                tes_stderr | 3
                                runtimeAttributes:docker | 3
                                status | 3
                                backendStatus | 3
                                runtimeAttributes:continueOnReturnCode | 3
                                runtimeAttributes:preemptible | 3
                                jobId | 3
                                callCaching:allowResultReuse | 3
                                tes_stdout | 3

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                                • Z
                                  zhanglu 最后由 zhanglu 编辑

                                  e886888f-c972-4932-a9a4-187525877ea0
                                  b9eec03b-590a-4a53-8a99-088fe01c9070
                                  2e97dac5-f31b-4cbe-8712-4610295c6dfa
                                  731bad53-fe54-43a2-b1d1-2639ac371a43

                                  DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'b9eec03b-590a-4a53-8a99-088fe01c9070' AND "METADATA_KEY" = 'vmStartTime';
                                  DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '2e97dac5-f31b-4cbe-8712-4610295c6dfa' AND "METADATA_KEY" = 'vmStartTime';
                                  DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '731bad53-fe54-43a2-b1d1-2639ac371a43' AND "METADATA_KEY" = 'vmStartTime';

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                                  • Z
                                    zhanglu 最后由 zhanglu 编辑

                                    SELECT
                                    "WORKFLOW_EXECUTION_UUID"
                                    FROM "METADATA_ENTRY"
                                    WHERE "METADATA_KEY" = 'vmStartTime'
                                    GROUP BY "WORKFLOW_EXECUTION_UUID", "METADATA_KEY"
                                    ORDER BY COUNT("METADATA_KEY") DESC
                                    LIMIT 20;

                                    DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" in (SELECT
                                    "WORKFLOW_EXECUTION_UUID"
                                    FROM "METADATA_ENTRY"
                                    WHERE "METADATA_KEY" = 'vmStartTime'
                                    GROUP BY "WORKFLOW_EXECUTION_UUID", "METADATA_KEY"
                                    ORDER BY COUNT("METADATA_KEY") DESC
                                    LIMIT 20;);

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                                    • Z
                                      zhanglu 最后由 编辑

                                      -------------------------------------+--------------+----------
                                      f44f2c67-22bd-4953-92d9-8b2da5207a55 | vmStartTime | 11750053
                                      346c5771-8908-43b9-a037-416d98f0f8f8 | vmStartTime | 11736980
                                      af81e1d7-c5e9-4852-b60d-a66196d37705 | vmStartTime | 4508036
                                      6e362360-32d0-4311-8d9f-a1a2ed5b61c2 | vmStartTime | 4109856
                                      f3aaa31b-59f6-4e35-930d-5fdc96e69960 | vmStartTime | 2707977
                                      a9fb5224-ede5-4227-a755-dae75c5e0ffc | vmStartTime | 2476125
                                      d0bc517a-5617-44c0-a054-b940fbcf8e86 | vmStartTime | 2097776
                                      e1d59bbb-a51e-471c-9efb-50d4dbb5affc | vmStartTime | 2025243
                                      3ed05f3a-1370-457a-9af7-8f70963afe6d | vmStartTime | 1920781
                                      3192edd4-c3cd-4b56-84c4-d78c80b64287 | vmStartTime | 1911856
                                      a61c1d9b-86b7-4455-85a7-e5435ac57ab5 | vmStartTime | 1910661
                                      e845ff2e-95ba-4108-bec5-7b8ece2fe76d | vmStartTime | 1876160
                                      2ee83a60-3d6e-4ea8-8616-18bff20e1cb0 | vmStartTime | 1866368
                                      b853a6ea-f7a8-4b14-987b-7152373151ec | vmStartTime | 1798726
                                      23fbc5cb-be12-4e80-8510-ab1a10774675 | vmStartTime | 1775239
                                      8ebdadd1-a61d-419e-9ce0-80b8cac41e9c | vmStartTime | 833653
                                      6da5292a-7d2f-40a8-aea3-d4e1b50052b6 | vmStartTime | 767197
                                      20283bc4-aacd-47bb-8c73-f450ea432bd7 | vmStartTime | 706487
                                      e2ca06ea-5df1-4e0b-83e3-2f0574632829 | vmStartTime | 682692
                                      e6f72645-4253-4581-85bf-e4cda8f51a13 | vmStartTime | 667930

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                                      • Z
                                        zhanglu 最后由 zhanglu 编辑

                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '9992a98d-9fbc-48a5-bf0f-13af49246128' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'e845ff2e-95ba-4108-bec5-7b8ece2fe76d' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '6e362360-32d0-4311-8d9f-a1a2ed5b61c2' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'ec7b2a76-ae8a-45f9-b484-5346b6f74efd' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'd0bc517a-5617-44c0-a054-b940fbcf8e86' AND "METADATA_KEY" = 'vmStartTime';

                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'f44f2c67-22bd-4953-92d9-8b2da5207a55' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '346c5771-8908-43b9-a037-416d98f0f8f8' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'af81e1d7-c5e9-4852-b60d-a66196d37705' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '6e362360-32d0-4311-8d9f-a1a2ed5b61c2' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'f3aaa31b-59f6-4e35-930d-5fdc96e69960' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'a9fb5224-ede5-4227-a755-dae75c5e0ffc' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'd0bc517a-5617-44c0-a054-b940fbcf8e86' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'e1d59bbb-a51e-471c-9efb-50d4dbb5affc' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '3ed05f3a-1370-457a-9af7-8f70963afe6d' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '3192edd4-c3cd-4b56-84c4-d78c80b64287' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'a61c1d9b-86b7-4455-85a7-e5435ac57ab5' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'e845ff2e-95ba-4108-bec5-7b8ece2fe76d' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '2ee83a60-3d6e-4ea8-8616-18bff20e1cb0' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'b853a6ea-f7a8-4b14-987b-7152373151ec' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '23fbc5cb-be12-4e80-8510-ab1a10774675' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '8ebdadd1-a61d-419e-9ce0-80b8cac41e9c' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '6da5292a-7d2f-40a8-aea3-d4e1b50052b6' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = '20283bc4-aacd-47bb-8c73-f450ea432bd7' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'e2ca06ea-5df1-4e0b-83e3-2f0574632829' AND "METADATA_KEY" = 'vmStartTime';
                                        DELETE FROM "METADATA_ENTRY" WHERE "WORKFLOW_EXECUTION_UUID" = 'e6f72645-4253-4581-85bf-e4cda8f51a13' AND "METADATA_KEY" = 'vmStartTime';

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                                        • Z
                                          zhanglu 最后由 编辑

                                          670765 D rm -rf /cephfs_data/genostack_v3/genostack_cromwell/cromwell-executions/metage_megahit/9992a98d-9fbc-48a5-bf0f-13af49246128/
                                          832494 D /usr/bin/mount -o bind,remount /proc/6616/fd/62 /var/lib/kubelet/pods/61ee2602-a811-4953-8fbe-c4f1afca762a/volume-subpaths/data/cromwell-runner/0
                                          833804 D /usr/bin/mount -o bind,remount /proc/6616/fd/49 /var/lib/kubelet/pods/2093bbf3-eb23-4139-8076-5bca5f720d1b/volume-subpaths/data/cromwell-runner/0
                                          989841 D /usr/bin/mount -o bind,remount /proc/6616/fd/70 /var/lib/kubelet/pods/322e9748-cb86-4355-9d7d-0e106533cf0a/volume-subpaths/data/cromwell-runner/0
                                          1360682 D sync
                                          1476802 Dl /usr/local/envs/py310/bin/python /usr/local/envs/py310/bin/gunicorn wsgi:flask_app -c instance/gunicorn.conf.py
                                          2303814 Dl /usr/local/envs/py310/bin/python /usr/local/envs/py310/bin/gunicorn wsgi:flask_app -c instance/gunicorn.conf.py
                                          2336314 Dl /usr/local/envs/py310/bin/python /usr/local/envs/py310/bin/gunicorn wsgi:flask_app -c instance/gunicorn.conf.py
                                          2668230 D rm -rf /cephfs_data/genostack_v3/genostack_cromwell/cromwell-executions/rnaseq_eukaryonanalysis/e2ca06ea-5df1-4e0b-83e3-2f0574632829/

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                                          • Z
                                            zhanglu 最后由 编辑

                                            strace sync
                                            execve("/usr/bin/sync", ["sync"], 0x7ffe4aa407b0 /* 33 vars /) = 0
                                            brk(NULL) = 0x55f54a1c7000
                                            arch_prctl(0x3001 /
                                            ARCH_??? */, 0x7fff30c2dda0) = -1 EINVAL (Invalid argument)
                                            access("/etc/ld.so.preload", R_OK) = -1 ENOENT (No such file or directory)
                                            openat(AT_FDCWD, "/etc/ld.so.cache", O_RDONLY|O_CLOEXEC) = 3
                                            fstat(3, {st_mode=S_IFREG|0644, st_size=56063, ...}) = 0
                                            mmap(NULL, 56063, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7f867bce6000
                                            close(3) = 0
                                            openat(AT_FDCWD, "/lib64/libc.so.6", O_RDONLY|O_CLOEXEC) = 3
                                            read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\2405\2\0\0\0\0\0"..., 832) = 832
                                            fstat(3, {st_mode=S_IFREG|0755, st_size=3167872, ...}) = 0
                                            mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f867bce4000
                                            lseek(3, 808, SEEK_SET) = 808
                                            read(3, "\4\0\0\0\20\0\0\0\5\0\0\0GNU\0\2\0\0\300\4\0\0\0\3\0\0\0\0\0\0\0", 32) = 32
                                            mmap(NULL, 3950400, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f867b703000
                                            mprotect(0x7f867b8bf000, 2093056, PROT_NONE) = 0
                                            mmap(0x7f867babe000, 24576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1bb000) = 0x7f867babe000
                                            mmap(0x7f867bac4000, 14144, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7f867bac4000
                                            close(3) = 0
                                            arch_prctl(ARCH_SET_FS, 0x7f867bce5540) = 0
                                            mprotect(0x7f867babe000, 16384, PROT_READ) = 0
                                            mprotect(0x55f549b32000, 4096, PROT_READ) = 0
                                            mprotect(0x7f867bcf4000, 4096, PROT_READ) = 0
                                            munmap(0x7f867bce6000, 56063) = 0
                                            brk(NULL) = 0x55f54a1c7000
                                            brk(0x55f54a1e8000) = 0x55f54a1e8000
                                            brk(NULL) = 0x55f54a1e8000
                                            openat(AT_FDCWD, "/usr/lib/locale/locale-archive", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
                                            openat(AT_FDCWD, "/usr/share/locale/locale.alias", O_RDONLY|O_CLOEXEC) = 3
                                            fstat(3, {st_mode=S_IFREG|0644, st_size=2997, ...}) = 0
                                            read(3, "# Locale name alias data base.\n#"..., 4096) = 2997
                                            read(3, "", 4096) = 0
                                            close(3) = 0
                                            openat(AT_FDCWD, "/usr/lib/locale/zh_CN.UTF-8/LC_IDENTIFICATION", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
                                            openat(AT_FDCWD, "/usr/lib/locale/zh_CN.utf8/LC_IDENTIFICATION", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
                                            openat(AT_FDCWD, "/usr/lib/locale/zh_CN/LC_IDENTIFICATION", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
                                            openat(AT_FDCWD, "/usr/lib/locale/zh.UTF-8/LC_IDENTIFICATION", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
                                            openat(AT_FDCWD, "/usr/lib/locale/zh.utf8/LC_IDENTIFICATION", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
                                            openat(AT_FDCWD, "/usr/lib/locale/zh/LC_IDENTIFICATION", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
                                            sync(

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