简化基因组分析

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https://pearg.github.io/pearg_documentation/tutorials/intro-rad-seq/

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https://simison.com/brian/Structure_notes.html

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https://evolution.genetics.washington.edu/phylip/

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https://github.com/evansbenj/Reduced-Representation-Workshop

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OneMap应用指南
https://mran.microsoft.com/snapshot/2017-02-04/web/packages/onemap/vignettes/Tutorial_Onemap_reduced_version.pdf

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https://evolution.genetics.washington.edu/phylip/tuimala3.pdf

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https://www.researchgate.net/post/Which-program-is-best-to-use-for-phylogeny-analysis

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python tagdigger_script.py -w . -b samples.csv -o mycounts.csv -k markerstokeep.txt --StacksTags ../ANCHA180152/ustack/catalog.tags.tsv.gz --StacksSNPs ../ANCHA180152/ustack/catalog.snps.tsv.gz --StacksAlleles ../ANCHA180152/ustack/catalog.alleles.tsv.gz

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https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0201254
A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates

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https://groups.google.com/g/stacks-users/c/1n6O98oWO2o/m/oRm3FYZTs1IJ?pli=1

Stacks不太适合多倍体（大于2）