RNA-seq分析流程

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https://pubmed.ncbi.nlm.nih.gov/31257520/
Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA‑gene pairs in small‑cell lung cancer

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https://docs.gdc.cancer.gov/Data/Bioinformatics_Pipelines/Expression_mRNA_Pipeline/
Data_UG.pdf

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https://htseq.readthedocs.io/en/master/
HTSeq: High-throughput sequence analysis in Python

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https://sydney-informatics-hub.github.io/training-RNAseq-slides/

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https://bioinformaticsworkbook.org/dataAnalysis/RNA-Seq/RNA-SeqIntro/RNAseq-using-a-genome.html#gsc.tab=0

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https://github.com/developerpiru/BEAVR

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(Chapman & Hall_CRC Mathematical and computational biology series) Huss, Mikael_ Korpelainen, Eija_ Somervuo, Panu_ Tuimala, Jarno_ Wong, Garry - RNA-seq data analysis a practical approach (2017).pdf

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04130-7

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ftp ftp.ccb.jhu.edu

cd pub/RNAseq_protocol
这个目录下有官方论文的示例数据
https://sci-hub.st/10.1038/nprot.2016.095