SRA的多文件问题

[anneng]

https://kb.10xgenomics.com/hc/en-us/articles/115003802691-How-do-I-prepare-Sequence-Read-Archive-SRA-data-from-NCBI-for-Cell-Ranger-

SRA API给的R1 R2 可能不是真正的R1 R2 有可能是其他文件

[anneng]

https://github.com/ncbi/sra-tools/wiki/HowTo:-fasterq-dump
https://www.biostars.org/p/12047/
spot
technical reads (adapters, primers, barcodes, etc) and there will always be at least one biological read (forward, reverse)

[anneng]

https://notarocketscientist.xyz/posts/2022-07-26-getting-index-reads-from-sra/
Getting Index Reads From SRA

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https://www.ebi.ac.uk/ena/browser/view/SRR4242282

这个例子列出了 三个文件

[anneng]

https://edwards.flinders.edu.au/fastq-dump/
https://notarocketscientist.xyz/posts/2022-07-26-getting-index-reads-from-sra/