暗能星系

zhanglu

平台env需要增加的配置：
AI_API=https://ai.genostack.com
AI_MODEL_PATH="${BASE_PATH}/ai_model"

zhanglu

TLS handshake error from 10.233.96.0:18546: remote error: tls: bad certificate

zhanglu

docker run -e PASSWORD=bioc -p 8789:8787 bioconductor/bioconductor_docker:RELEASE_3_19-R-4.4.0.bk.20240627

zhanglu

Caused by: org.postgresql.util.PSQLException: ERROR: duplicate key value violates unique constraint "PK_METADATA_JOURNAL"
Detail: Key ("METADATA_JOURNAL_ID")=(3106732) already exists.
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2440)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2183)
... 40 more

zhanglu

2024-07-03 06:31:14.942 [INFO][9] startup/startup.go 451: Hit error connecting to datastore - retry error=Get "https://10.233.0.1:443/api/v1/nodes/foo": net/http: TLS handshake timeout

zhanglu

ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQDAJGzJ+KvXx0xDC8aJw+/5jvI8+yHWMj54I3r9xBnmG+ICjusUV++zevR0NJJyKzTNH62aug3m2J+v7BxoiCLDN0SCwDI8XP0UV5WaMymCYSfpWoh9/WepLO1rAGVnonhI6zDCyy4JaJCcMiYR8D/XgfMrRBP/46Zwj+9JlofKTBk1cwiKmx1gcvGDcGMojNP+ibngCNTdhA56yYwlPXmgjXXKI1O5FAp3OEbhIE0R1VImSkmR2NHNNiQVtcvg4EIEp0ZD4y0dLDQ5t9CtiCzRGryhZSjyoIhdqtyhMGn+ITvMawhygh2BEgaLcNIPiTVF6aQEbH5rG86Nkgbi+LTZ root@localhost

zhanglu

"default-runtime": "nvidia",
"runtimes": {
    "nvidia": {
        "path": "/usr/bin/nvidia-container-runtime",
        "runtimeArgs": []
    }
}

zhanglu

distribution=$(. /etc/os-release;echo $ID$VERSION_ID)
curl -s -L https://nvidia.github.io/nvidia-docker/gpgkey | sudo rpm --import -
curl -s -L https://nvidia.github.io/nvidia-docker/$distribution/nvidia-docker.repo | sudo tee /etc/yum.repos.d/nvidia-docker.repo
sudo yum install -y nvidia-docker2
sudo systemctl restart docker

zhanglu

wget https://console.genostack.com/php_sours/process_and_input/2024_05_24/17165442884169.wdl
wget https://console.genostack.com//php_sours/process_and_input/2024_03_06/17097083111747.wdl

zhangfanglin

tt.txt

zhangfanglin

tt.txt

zhanglu

pkill docker
iptables -t nat -F
ifconfig docker0 down
brctl delbr docker0
docker -d

zhanglu

zhanglu

url = f"{url}/ms_jk/query_app_version"

zhanglu

ms-kinases.yaml 32048
ms-ksea.yaml 32047
cat ms-stem.yaml 32046
cat ms-chorddiagram.yaml 32045
cat ms-circos-heatmap.yaml 32044
cat ms-nmf.yaml 32043
cat ms-dumbbell.yaml 32041
cat ms-sankey.yaml 32042

zhanglu

yum remove docker-ce docker-ce-cli containerd.io
yum list docker-ce --showduplicates | sort -r

yum install -y docker-ce-24.0.7-1.el8 docker-ce-cli-24.0.7-1.el8 containerd.io

systemctl start docker

docker run -it dockerhub.genostack.com:8090/library/ubuntu:20.04 bash
ms-chorddiagram NodePort 10.233.57.199 <none> 5000:31045/TCP 33m
ms-circos-heatmap NodePort 10.233.45.213 <none> 5000:31044/TCP 33m
ms-color NodePort 10.233.39.0 <none> 5000:32001/TCP 34m
ms-dumbbell NodePort 10.233.55.63 <none> 5000:31041/TCP 33m
ms-protein-location NodePort 10.233.24.185 <none> 5000:32004/TCP 33m
ms-protein-ppi NodePort 10.233.59.111 <none> 5000:31025/TCP 33m
ms-roc NodePort 10.233.37.136 <none> 5000:31009/TCP 33m
ms-sankey NodePort 10.233.48.75 <none> 5000:31042/TCP 33m
public-services NodePort 10.233.10.74 <none> 5000:31040/TCP 35m

zhanglu

curl 10.233.57.199:5000/ms_jk/query_app_version
curl 10.233.45.213:5000/ms_jk/query_app_version
curl 10.233.39.0:5000/ms_jk/query_app_version
curl 10.233.55.63:5000/ms_jk/query_app_version
curl 10.233.24.185:5000/ms_jk/query_app_version
curl 10.233.59.111:5000/ms_jk/query_app_version
curl 10.233.37.136:5000/ms_jk/query_app_version
curl 10.233.48.75:5000/ms_jk/query_app_version
curl 10.233.10.74:5000/ms_jk/query_app_version

zhanglu

api/v1/nodes/foo": net/http: TLS handshake timeout

zhanglu

https://[10.233.0.1]:443/apis/crd.projectcalico.org/v1/clusterinformations/default": net/http: TLS handshake timeout,

zhanglu

TASK [bootstrap-os : Install libselinux python package] ********************************************************
fatal: [node4]: FAILED! => {"changed": false, "cmd": "dnf install -y python2-dnf", "msg": "Could not import the dnf python module using /usr/bin/python (2.7.18 (default, Aug 25 2021, 15:50:49) [GCC 8.5.0 20210514 (Red Hat 8.5.0-3)]). Please install python2-dnf package or ensure you have specified the correct ansible_python_interpreter.", "rc": 1, "results": [], "stderr": "错误：没有任何匹配: python2-dnf\n", "stderr_lines": ["错误：没有任何匹配: python2-dnf"], "stdout": "上次元数据过期检查：0:32:43 前，执行于 2024年08月24日星期六 13时57分27秒。\n未找到匹配的参数: python2-dnf\n", "stdout_lines": ["上次元数据过期检查：0:32:43 前，执行于 2024年08月24日星期六 13时57分27秒。", "未找到匹配的参数: python2-dnf"]}

tmp