NCBI

anneng

https://academic.oup.com/database/article/doi/10.1093/database/bax008/3737827
Workflow and web application for annotating NCBI BioProject transcriptome data

anneng

https://github.com/omicidx/omicidx
http://omicidx.cancerdatasci.org/

一个NCBI的索引项目和我们要做的一样
https://github.com/omicidx/omicidx-parsers

http://omicidx.cancerdatasci.org/docs/

anneng

https://nf-co.re/fetchngs
nf-core/fetchngs is a bioinformatics pipeline to fetch metadata and raw FastQ files from both public and private databases. At present, the pipeline supports SRA / ENA / DDBJ / GEO / Synapse ids
通过ID的方式获取数据

anneng

https://physiology.med.cornell.edu/faculty/skrabanek/lab/angsd/lecture_notes/Sullivan2017_NCBI_sequenceArchives.pdf

对NCBI各个库的解释