暗能星系

    • 登录
    • 搜索

    emapper annotations 文件说明

    生物信息分析
    1
    2
    2
    正在加载更多帖子
    • 从旧到新
    • 从新到旧
    • 最多赞同
    回复
    • 在新帖中回复
    登录后回复
    此主题已被删除。只有拥有主题管理权限的用户可以查看。
    • A
      anneng 最后由 编辑

      https://wap.sciencenet.cn/blog-3334560-1141511.html?mobile=1
      制表符分隔的13列文件,如下:

      序列名query_name: query sequence name
      eggNOG编号seed_eggNOG_ortholog: best protein match in eggNOG
      seed_ortholog_evalue: best protein match (e-value)
      seed_ortholog_score: best protein match (bit-score)
      预测基因名predicted_gene_name: Predicted gene name for query sequences
      逗号分隔的GO注释GO_terms: Comma delimited list of predicted Gene Ontology terms
      KO编号注释KEGG_KO: Comma delimited list of predicted KEGG KOs
      代谢反应BiGG_Reactions: Comma delimited list of predicted BiGG metabolic reactions
      注释物种范围Annotation_tax_scope: The taxonomic scope used to annotate this query sequence
      OG编号Matching_OGs: Comma delimited list of matching eggNOG Orthologous Groups
      best_OG|evalue|score: Best matching Orthologous Groups (only in HMM mode)
      COG分类COG functional categories: COG functional category inferred from best matching OG
      模型注释eggNOG_HMM_model_annotation: eggNOG functional description inferred from best matching OG

      Matching_OGs 是什么意思?
      https://github.com/eggnogdb/eggnog-mapper/issues/129
      例如 05CPZ 就是eggNOG的
      http://eggnogdb.embl.de/#/app/results?target_nogs=05CPZ

      1 条回复 最后回复 回复 引用 0
      • A
        anneng 最后由 编辑

        https://github.com/eggnogdb/eggnog-mapper/issues/81

        1 条回复 最后回复 回复 引用 0
        • First post
          Last post
        Powered by 暗能星系