ampliseq流程验证问题记录

zhanglu

diversity core-metrics-phylogenetic Alpha & beta diversity

qiime diversity core-metrics-phylogenetic
--i-phylogeny rooted-tree.qza
--i-table table.qza
--p-sampling-depth 1103
--m-metadata-file sample-metadata.tsv
--output-dir core-metrics-results

报错
Plugin error from diversity:

Command '['ssu', '-i', '/tmp/qiime2/wia/data/961a15cd-2e5b-4d84-94d9-5e2f9d960b1a/data/feature-table.biom', '-t', '/tmp/qiime2/wia/data/b3a7dc27-3dd3-48b5-aa2f-6dde6d92615d/data/tree.nwk', '-m', 'unweighted', '-o', '/tmp/q2-LSMatFormat-21ficw8c']' returned non-zero exit status 1.

See above for debug info.

解决方式：
export UNIFRAC_USE_GPU=N
参考：https://forum.qiime2.org/t/diversity-core-metrics-phylogenetic-alpha-beta-diversity/24086