使用vep进行注释
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sudo docker run -t -i --user=1000 -v /ceph_disk3/sv_taozi/prune/:/data ensemblorg/ensembl-vep:latest
vep --gff /data/Prunus/Prunus_persica_v2.0.a1.gff.gz -i /data/Prunus/merged.sv.pruned.vcf --fasta /data/Prunus/Prunus_persica_v2.0.a1_scaffolds.fasta --stats_file /data/vep.html --format=vcf -o /data/variant_effect_output.txt --force_overwrite
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The input file appears to be unsorted. Please sort by chromosome and by location and re-submit
--no_check_variants_order