小米SSR、SNP挖掘
-
Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0159437SSRs are PCR-based [19], highly polymorphic, hypervariable, co-dominant, reproducible, multi-allelic and distributed throughout the genome。
They are co-dominant, bi-allelic, highly polymorphic, reproducible [24] and can be automated for high throughput genotyping. For these reasons, SNP markers are frequently used for genotyping large numbers of individuals for genomics-assisted breeding and genetic diversity applications. As an allotetraploid (AA and BB sub-genomes) with high levels of inbreeding, SNP discovery in finger millet can be challenging due to low polymorphism levels and high numbers of homeologous SNPs, which occur as a result of polymorphism between the AA and BB sub-genomes of the same individual.
-
Kalia RK, Rai MK, Kalia S, Singh R, Dhawan a. K. SSR markers: an overview of the recent progress in plants. Euphytica. 2010 Nov 9;177(3):309–34.
-
Singhal D, Gupta P, Sharma P. In-silico single nucleotide polymorphisms (SNP) mining of Sorghum bicolor genome. African J Biotechnol. 2013;10(4):580–3.
-
https://link.springer.com/content/pdf/10.1186/1297-9686-34-3-275.pdf
A review on SNP and other types of molecular markers and their use
in animal genetics -
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3536327/
SNP Markers and Their Impact on Plant Breeding