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    • 免疫组学

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      A

      https://www.sc-best-practices.org/air_repertoire/ir_profiling.html
      56a55e24-8f0e-4b43-a73b-0ee7beaf8d4e-image.png

      VDJ过程
      adc29db5-511a-48a1-bd0f-e9269ac0a751-image.png

    • 细胞与基因疗法 cell and gene therapy

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      A

      Definition of Gene Therapy in the EU
      In the EU, the definition of a Gene Therapy Medicinal Product (GTMP) is provided
      in Directive 2009/120/EC amending Directive 2001/83/EC, part IV of Annex I.
      A GTMP means a biological medicinal product that has the following
      characteristics:
      (a) it contains an active substance that contains or consists of a recombinant
      nucleic acid used in or administered to human beings with a view to
      regulating, repairing, replacing, adding or deleting a genetic sequence;
      (b) its therapeutic, prophylactic or diagnostic effect relates directly to the
      recombinant nucleic acid sequence it contains, or to the product of the
      genetic expression of this sequence.
      GTMPs do not include vaccines against infectious diseases.
      Hazel Aranha, Humberto Vega-Mercado - Handbook of Cell and Gene Therapy_ From Proof-of-Concept through Manufacturing to Commercialization-CRC Press (2023).pdf

    • 代谢组学

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      A

      核磁在代谢组学中的应用

      1.核磁共振技术原理
      https://www.youtube.com/watch?v=pUWcXvw1Rsg
      https://www.bilibili.com/video/BV1CU4y1E7xL/?spm_id_from=333.788.recommend_more_video.-1(有中文翻译 比较好)

    • 司法

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      A

      https://bitbucket.org/rirgabiss/mhinngs/src/master/
      MHinNGS is a tool for analysis of microhaplotypes (MHs) in singleend sequencing data obtained through a massive parallel sequencing plattform (MPS). The tool identifies the reads with the MHs and calls the genotypes of the MHs according to the criteria and positions specified in the configuration file. It also searches for additional variants in the region defined by the start and the stop positions specified in the configuration file.
      这个软件的输入是参考序列和原始单端测序的fastq 包括了比对过程 依赖的第三方软件包括
      python 3.6 including pip
      samtools version 1.9
      hisat2 version 2.1.0
      stringtie version 2.0.3
      agrep T.R.E. version 0.8.0
      不支持双端序列

    • 表观遗传学

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      A

      https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3828144/
      Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data
      3d1f0fc6-d2ed-4539-9cde-0c03bde51949-image.png

    • 合成生物学

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      A

      https://github.com/mesoscope

    • 植物基因组学

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      M

      参考

      https://gatk.broadinstitute.org/hc/en-us/articles/360035531572-Evaluating-the-quality-of-a-germline-short-variant-callset

    • 蛋白组学

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      A

      https://www.sinobiological.com/resource/protein-review/fc-fusion-proteins
      46c1ca94-e2a9-44bd-b53e-593a82afcd3c-image.png

    • 临床生物信息

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      A

      1689181129856.gif

    • 肿瘤NGS数据分析

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      A

      https://civicdb.org/pages/about

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      haplotype frequency estimation
      • anneng

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    • A

      R1 R2合并
      • anneng

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      A

      https://www.ncbi.nlm.nih.gov/labs/pmc/articles/PMC5657622/

      BBMerge – Accurate paired shotgun read merging via overlap
      662e741f-d611-48de-a1c4-ae91281fb8ac-image.png

    • A

      genostack的商业模式
      • anneng

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    • A

      一个流程仓库https://workflowhub.eu/
      • anneng

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    • A

      一个基于CWL的二三代混合组装流程
      • anneng

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    • A

      bowtie2 在比对时加上--local
      • anneng

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    • A

      drug discovery
      • anneng

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    • A

      基因组组装
      • anneng

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      A

      https://www.frontiersin.org/articles/10.3389/fcimb.2021.696669/full
      e935dbea-8cab-48c5-abb6-6ee8afb3f8fc-image.png

    • A

      blast在查询时会查两个方向
      • anneng

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    • A

      https://bio.tools/
      • anneng

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      A

      https://edamontology.github.io/edam-browser/

    • A

      Design considerations for workflow management systems use in production genomics research and the clinic
      • anneng

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    • A

      building-cloudenabled-genomics-workflows-with-luigi-and-docker
      • anneng

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    • Z

      bismark-methylation 甲基化流程
      • zhanglu

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    • A

      ncbi linux搜索命令
      • anneng

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    • A

      单细胞公共数据库
      • anneng

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      A

      Database of Immune
      Cell Expression

    • A

      单细胞类型注释
      • anneng

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      A

      962d3eea-f1f1-425a-8548-c227345d5935-image.png

    • A

      二代测序的variant calling流程分析
      • anneng

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    • A

      Unwrap your fasta
      • anneng

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    • A

      Tutorial: Piping With Samtools, Bwa And Bedtools
      • anneng

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      bwa mem genome.fa reads.fastq | samtools sort -o output.bam -

    • A

      metamos a modular framework for (meta)genomic assembly, analysis and validation
      • anneng

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